All pull requests

Pull requests

• fix(skill): match a BRENDA transformation regardless of metabolite spelling

  #891·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 2, 2026Contributor·2 of 8 tasks·

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• fix(session): answer a zero prompt window with nothing instead of everything

  #890·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 2, 2026Contributor·2 of 8 tasks·

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• fix(skill): name the channel when no CFSE event survives the log transform

  #889·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 2, 2026Contributor·2 of 8 tasks·

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• build(deps): bump the actions group with 3 updates

  dependenciesgithub_actions
  #888·dependabot[bot] opened Oct 2, 2026Bot·

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• build(deps): bump zod-to-json-schema from 3.24.5 to 3.25.2

  dependencies
  #887·dependabot[bot] opened Oct 2, 2026Bot·

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• build(deps): bump @codemirror/state from 6.7.1 to 6.7.6

  dependencies
  #886·dependabot[bot] opened Oct 2, 2026Bot·

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• build(deps): bump molstar from 5.10.1 to 5.12.0

  dependencies
  #885·dependabot[bot] opened Oct 2, 2026Bot·

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• build(deps): bump @clack/prompts from 1.0.0-alpha.1 to 1.8.1

  dependencies
  #884·dependabot[bot] opened Oct 2, 2026Bot·

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• build(deps-dev): bump the dev-tools group with 2 updates

  dependencies
  #883·dependabot[bot] opened Oct 2, 2026Bot·

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• fix(experiments): fall back to the GPU label when the name cell is blank

  #882·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 2, 2026Contributor·2 of 8 tasks·

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• fix(bash): refuse a non-positive timeout instead of running unbounded

  #881·yi111 (Yi-111-a) opened Oct 2, 2026·

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• fix(skill): correct the GC of the window codon optimization was asked about

  #880·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·2 of 8 tasks·

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  2

• fix(workspace): name the root as the folder of a file that sits at one

  #879·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·3 of 8 tasks·

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• fix(files): preview a remote file that has no extension

  #878·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·2 of 8 tasks·

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• fix(workspace): match a manuscript to its assets across Windows path case

  #877·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·2 of 8 tasks·

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• fix(workspace): preview an artifact with no extension as the viewer does

  #876·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·2 of 8 tasks·

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• fix(workspace): stop a blank line in delimited data becoming a row

  #875·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·3 of 8 tasks·

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• fix(workspace): show the mzml run overview for runs with many scans

  #874·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·2 of 8 tasks·

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• fix(command): order a command's numbered placeholders as numbers

  #873·ANIRUDDHA ADAK (aniruddhaadak80) opened Oct 1, 2026Contributor·2 of 8 tasks·

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• fix(workspace): resolve a figure whose alt text holds balanced brackets

  #869·ANIRUDDHA ADAK (aniruddhaadak80) opened Sep 30, 2026Contributor·2 of 8 tasks·

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• fix(session): report the characters a request excerpt really drops

  #868·ANIRUDDHA ADAK (aniruddhaadak80) opened Sep 30, 2026Contributor·2 of 8 tasks·

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• fix(session): report the characters a capped tool result really drops

  #867·ANIRUDDHA ADAK (aniruddhaadak80) opened Sep 30, 2026Contributor·2 of 8 tasks·

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• fix(grep): make a bounded search return the same files every time

  #866·ANIRUDDHA ADAK (aniruddhaadak80) opened Sep 30, 2026Contributor·

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• fix(ui): keep an approved payload size consistent with its own unit

  #864·ANIRUDDHA ADAK (aniruddhaadak80) opened Sep 30, 2026Contributor·

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• fix(ui): floor both halves of a task duration

  #862·ANIRUDDHA ADAK (aniruddhaadak80) opened Sep 30, 2026Contributor·

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