Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

As a cell-free DNA (cfDNA) processing pipeline, Triton conducts fragmentomic and phased-nucleosome coverage analyses on individual or composite genomic regions and outputs both region-level biomark…

Official Code of LabOS: the AI-XR Co-Scientist that Sees and Works with Humans

High-performance UMI tools for NGS data analysis

A visual, example-driven guide to Claude Code — from basic concepts to advanced agents, with copy-paste templates that bring immediate value.

Use Garry Tan's exact Claude Code setup: 23 opinionated tools that serve as CEO, Designer, Eng Manager, Release Manager, Doc Engineer, and QA

☄️ Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)

syncmer graphs, and perhaps other sorts of sequence graphs

A Python-based compendium of GPU-optimized aging clocks.

parallel fastq-dump wrapper

Biomni: a general-purpose biomedical AI agent

"CLI-Anything: Making ALL Software Agent-Native" -- CLI-Hub: https://clianything.cc/

A scientific plotting library in Rust

Download FASTQ files from SRA or ENA repositories.

AI agents running research on single-GPU nanochat training automatically

Dynamic, resilient AI orchestration. Coordinate data, models, and compute as you build AI workflows.

An agentic skills framework & software development methodology that works.

BioMCP: Biomedical Model Context Protocol

plane sweep filtering genome alignments

Permutect, an incredibly efficient deep learning architecture for somatic and germline variant calling

A complete AI agency at your fingertips - From frontend wizards to Reddit community ninjas, from whimsy injectors to reality checkers. Each agent is a specialized expert with personality, processes…

A native Swift Amazon Bedrock app for conversations, documents, images, and local tools.

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

a set of SKILLS.md for doing bioinformatics with agents like claude code

A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relating to PyTorch.

A lightweight alternative to OpenClaw that runs in containers for security. Connects to WhatsApp, Telegram, Slack, Discord, Gmail and other messaging apps,, has memory, scheduled jobs, and runs dir…

Gas Town - multi-agent workspace manager