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Read-ahead / write-behind byte IO: threaded Reader/Writer that decouple a pipeline stage from the kernel pipe via a background thread and a byte ring buffer
Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data
Cargo subcommand to build multiple versions of the same binary, each with a different CPU features set, merged into a single portable optimized binary
Fast, highly accurate, read-trimming for NGS data.
A crate to help you go wide. By which I mean use SIMD stuff.
A zlib implementation in rust available as a C dynamic library and as a rust crate
Tools (written in C using htslib) for manipulating next-generation sequencing data
Spiritual successor to picard for sequencing qc
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression
Java JNI wrapper around libdeflate for faster DEFLATE/gzip/zip on the JVM
A high-performance HGVS variant nomenclature parser and normalizer written in Rust
A better, faster way to count guides in CRISPR screens.
A small utility for formatting things the way Tim prefers.
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
This repository contains information about latest release from Genome in a Bottle project
Create force-directed graphs of RNA secondary structures.
Tools for working with genomic and high throughput sequencing data.
A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
A Java API for high-throughput sequencing data (HTS) formats.
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.