ancestral-sequence-reconstruction

Python framework for doing ancestral sequence reconstruction

Ancestral sequence reconstruction with gap-state inference using IQ-TREE

This is Phyne: a Rust crate for indel-aware phylogenetics

ARPIP: Ancestral sequence Reconstruction under PIP

AncFlow: A snakemake based pipeline for the ancestral sequence reconstruction of clustered phylogenetic subtrees.

Ancestral sequence reconstruction using generative models

Calculate conditional probability distributions of extant sequences given a phylogenetic tree, sequence alignment, and evolutionary model.

A new model-selection criteria for phylogenetics to calculate the predictive log-likelihood score.

Ancestral Sequence Reconstruction (ASR)

A set of useful Python scripts for computational evolutionary biologists

🛠️ Monitor your storage devices' health and performance with Disk Insight, a user-friendly tool that provides detailed SMART data and temperature readings.

Ancestral felid mitochondrial genome reconstruction from 83 feliform mitogenomes (5 extinct felids), with full validation and a documented retraction of its original phenotypic conclusions.

This repository includes the scripts used for analysis investigating the dynamics of indels in mammalian orthologous proteins and the examination of the ancestral reconstruction of multiple-character indels under the PIP.

BioPython for create ancestrals seqvences

La Loca LLAMA a local Llama 🦙 herd running on your computer. Manage AI as in Ancestral Intelligence and NOT Artificial Intelligence. Run local Llama without the burdens of the coop, sit down, chill, enjoy, play some music, write and CREATE PLEASE Riding the Ancestral FIRES, Flaming with desires, LA LOCA LLAMA QUE NO PUEDE APAGAR ESA VELA, Cristina

Calculate the parsimony cost of having an ancestral residue implied by an alignment and tree