End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis
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May 3, 2024 - Shell
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annovar
Here are 6 public repositories matching this topic...
2016 Genomics Epidemiology Workshop
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Aug 2, 2019 - Shell
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Oct 16, 2018 - Shell
Reproducible benchmarks: VarNova vs ANNOVAR, VEP, and SnpEff. VarNova is 14× faster than ANNOVAR and 10.7× faster than VEP on full genomic variant annotation pipeline. Includes binary download, benchmark scripts, and test data.
rust benchmark bioinformatics genomics vep variant-annotation exome-sequencing annovar snpeff hg38 clinical-genomics
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Jun 27, 2026 - Shell
Germline variant calling pipeline using FastQC, BWA, GATK HaplotypeCaller, VEP and ANNOVAR for paired-end NGS data
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Nov 23, 2024 - Shell
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