A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
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Updated
Apr 9, 2023 - Perl
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bioinfomatics-pipeline
Here are 4 public repositories matching this topic...
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
visualization bioinformatics deep-learning genomics tabular-data single-cell biomarker-discovery classification-algorithm biomarkers bioinfomatics-pipeline genomic-data-analysis genomics-visualization regression-algorithms data-classification bioinformatics-tool trajectory-inference cell-annotation multi-omic-integration
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May 27, 2024 - Python
First systematic transcriptomic analysis of E-MTAB-2990 - potato phosphate stress response across four cultivars | MSc Bioinformatics internship project
bioinformatics r microarray transcriptomics potato limma bioinfomatics-pipeline plant-sciences marispiper phosphate-stress
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Jul 1, 2026
Autonomous genomic surveillance & MLOps pipeline tracking NCBI pathogen drift via FASTA k-mer feature extraction, DuckDB Parquet OLAP storage, and Scikit-learn IsolationForest anomaly detection.
zsh genomics scikit-learn python3 parquet fasta duckdns bioinfomatics-pipeline anomaly-detection mlops github-actions wsl2 ncbi-entrez
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Oct 2, 2026 - Python
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