dna-origami

Cadnano2

Web application for designing DNA structures such as DNA origami.

Python scripting library for generating designs readable by scadnano.

SNUPI (Structured NUcleic-acids Programming Interface)

DNA Tools for Simulations

Programmed Eulerian Routing for DNA Design using X-overs

Unified Nanotechnology Format

Various tools for analyzing staple strands in DNA origami structures created with cadnano.

Designer three layered wireframe DNA origami

Three-dimensional, Algorithmically-generated Library of DNA Origami Shapes

Web application for design and synthesis of 3D DNA nanostructures.

Tool to validate DNA origami nanostructure designs made in caDNAno2, providing various informatics regarding the structure oligonucleotides.

Force field parameters and supplementary scripts for the "A coarse-grained model for DNA origami" paper by R. Reshetnikov, A. Stolyarova, A. Zalevsky et. al.

Autonomous Generation of DNA Origami Nanostructures - Summer Project

Evidence corpus from agentic-loop runs against the NDI Gen-1 DNA-origami actuator simulation programme

Supplementary files

Infrastructure énergétique décentralisée exploitant la cohérence quantique à température ambiante et les liquides de Tomonaga-Luttinger pour une récolte d'énergie environnementale ubiquitaire

Inverse design on patchy tiles for superlattice assembly using discrete Neural Adjoint (dNA) method

Reproducible R/Bioconductor GSEA analysis of immune activation signatures linked to DNA origami nanostructure design.