dna

tools for working with genome variation graphs

Python and C++ code for reading and writing genomics data.

UGENE is free open-source cross-platform bioinformatics software

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

A fast 23andMe DNA parser and inferrer for Python

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

The standalone code to simulate the oxDNA/oxRNA models, now equipped with Python bindings and the oxDNA_analysis_tools suite

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

BioC++ core library (alphabet, meta, ranges)

Ultrafast sequence typing and gene detection from NGS raw reads

High-performance stochastic modeling of DNA loop extrusion interactions

Biotechnology protocols improved with Artificial Intelligence for the MIT biotechnology tournament iGem 2019. Check out our website!

PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.

A simple yet powerful sequence clustering tool.

Generate any random de Bruijn sequence fast and efficiently

DNAdrive is a science project which makes data storage in bacteria possible. Given binary data, it constructs DNA sequences (aka packets) which can be used as protospacers in CRISPR-based systems, such as the one found in Escherichia Coli. 🔬

LCS is an algorithm to find the Longest Common Subsequence between two Strings.

DNA is a statically typed compiled programming language powered by the Ribosome compiler and the Helix toolchain.