Syntax highlighting for computational biology
VAPiD: Viral Annotation and Identification Pipeline
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
Utilities for analyzing next generation sequencing data.
Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA. Written in Bash. All in one place.
Donut: automated Circos visualization of multiple fasta files within a docker image
Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools
A small collection of one-liners in a one bash script for fasta files processing.
The official Seqs-Extractor Repository
BASH scripts to extract information from FASTA files.
simple and convenient program to convert fasta sequences to fastq sequences
Inspired from https://www.bioinformatics.org/sms2/combine_fasta.html.
Runtime data directory for the OmniBioAI platform — directory structure, sample bioinformatics files, and registry configuration for bootstrapping a local instance.
get bed file for N bases from a FASTA file
Comparative Analysis of DNA sequencing Algorithm
Command-line genome FASTA analyzer (sequence count, length & GC%)
GC content analyzer for FASTA files, written in Bash
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