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local-alignment

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Gagniuc / BioAlign

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Star 9

BioAlign is a self-contained, browser-based tool for Smith–Waterman local sequence alignment and interactive heatmap visualization. It supports DNA, RNA, protein, numeric, and ASCII sequences, with customizable scoring, themes, local storage, fullscreen mode, and PNG/FASTA export.

javascript bioinformatics rna-seq tool heatmap html5-canvas smith-waterman dna protein alignment rna fasta sequence-alignment browser-based local-alignment
  • Updated Sep 18, 2026
  • HTML

Amirreza-Mousavi / Protein_Normalized_SW_Similarity_Score

Star 1

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

r psa computational-biology smith-waterman protein drug-discovery protein-sequences fasta sequence similarity-score sequence-alignment similarity-matrix dti fasta-sequences pairwise-alignment local-alignment smith-waterman-alignment computer-aided-drug-design biostrings dti-prediction
  • Updated Dec 23, 2021
  • R

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