Python package for processing and analyzing Illumina DNA methylation data
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Jul 8, 2026 - Python
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microarray-data-analysis
Here are 45 public repositories matching this topic...
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
quality-control transcriptomics pathway-analysis differential-expression batch-correction microarray-data-analysis
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Jun 22, 2026 - R
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
bioinformatics microarray microarray-data aml acute-myeloid-leukemia geoparse microarray-data-analysis genetic-expression-omnibus
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May 27, 2021 - Python
Collection of gene expression datasets
rna-seq gene-expression microarray microarray-data datasets microarray-data-analysis rna-seq-datasets transciptomics
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May 9, 2026
PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery
single-cell scrna-seq-analysis microarray-data-analysis patient-subtyping cell-types subtype-finding
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Oct 2, 2025 - Python
NormalizeQuantiles.jl implements quantile normalization
bioinformatics statistics quantile-normalization normalize-quantiles quantile-normalisation normalise-quantiles microarray-data-analysis
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May 26, 2026 - Julia
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
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Nov 18, 2019 - R
"Identification of Biomarkers for Early-Stage Hepatocellular Carcinoma (HCC)" aims to address the critical global challenge of late-stage cancer diagnosis, which significantly lowers patient survival rates. It explores microarray gene expression datasets from GEO to identify potential early-stage biomarkers for improved patient outcomes.
bioinformatics gene data-analytics biomarker cancer-research biomarker-discovery hepatocellular-carcinoma microarray-data-analysis globalhealth data-science-in-healthcare early-cancer-detection
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Oct 3, 2024 - Jupyter Notebook
Source code and description of GCSscore Package
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Aug 4, 2023 - R
Acute Myeloid Leukemia Microarray Analysis
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Feb 8, 2021 - Jupyter Notebook
Tumor Identification Based on Machine Learning Analysis of Microarray Data
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Feb 1, 2025 - Jupyter Notebook
An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))
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Jan 7, 2023 - R
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
python datascience microarray datasets preprocessing ncbi ncbi-geo ncbi-database geneexpression preprocess-dataset microarray-data-analysis
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Jul 28, 2020 - Python
This repository contains code for identifying potential biomarkers of 2022 mpox virus using transcriptomic and machine learning analysis.
string machine-learning-algorithms pca-analysis deseq2 gene-ontology data-normalization rna-seq-analysis roc-curve tsne kegg-pathway umap limma differential-gene-expression scikitlearn-machine-learning random-forest-classifier ppi-networks microarray-data-analysis pycaret gene-set-enrichment-analysis feature-importance-analysis
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Apr 10, 2025 - Jupyter Notebook
Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University
r hpc omics rna-seq-analysis ghent-university multi-omics methylation-analysis microarray-data-analysis pcos high-throughput-data-analysis polycystic-ovary-syndrome
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Jan 18, 2024
Analysis of long continuous stretches of homozygosity of the human genome.
python bioinformatics microarray genome-analysis bioinformatics-analysis lcsh microarray-data-analysis homozygosity cromosome
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Mar 19, 2023 - Jupyter Notebook
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
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Jan 13, 2023 - R
WGCNA-based lncRNA module analysis in castration-resistant prostate cancer metastasis (GSE74685).
bioinformatics bioinformatics-pipeline microarray bioinformatics-analysis lncrna wgcna prostate-cancer-detection lncrna-pipeline microarray-data-analysis prostate-cancer-biopsies gse74685
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May 17, 2026 - R
A pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).
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Jun 7, 2022 - Python
Nextcast: a software suite to analyse and model toxicogenomics data
bioinformatics analytics cheminformatics feature-selection modelling network-analysis transcriptomics qsar functional-annotation multi-view-clustering dose-response microarray-data-analysis read-across
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Oct 31, 2024 - R
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