Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

Ngio is a Python library to streamline OME-Zarr image analysis workflows.

Pure python/C++ micro-manager ecosystem

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

An introduction to OME-Zarr for big bioimaging data

Main tasks for the Fractal analytics platform

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

GIve easy, high-level access to ome-zarr fileset

A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-Zarr tools.

Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

Large-scale cell segmentation with cellpose.

Tooling to build ome-zarr plate converters

Load OME-Zarr data into napari

Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.

A collection of fractal tasks to convert HCS Plates to OME-Zarr