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secondary-metabolites

Here are 9 public repositories matching this topic...

nf-core / funcscan

(Meta-)genome screening for functional and natural product gene sequences

Updated Sep 21, 2026
Nextflow

zellerlab / GECCO

GEne Cluster prediction with COnditional random fields.

python bioinformatics genomics metagenomics secondary-metabolites natural-products biosynthetic-gene-clusters

Updated Jul 29, 2026
Python

lab-of-biochemai / DeepSeMS

DeepSeMS: a large language model reveals hidden biosynthetic potential of the global ocean microbiome.

secondary-metabolites chemical-structures large-language-model microbial-biosynthetic-gene-clusters

Updated Apr 24, 2026
Python

RuolinHe / SIDERITE

Siderophore Information Database

secondary-metabolites natural-products

Updated Jan 28, 2026
HTML

jorgecnavarrom / BGClib

Methods and classes to support Biosynthetic Gene Cluster analysis

bioinformatics secondary-metabolites bgc biosynthetic-gene-clusters

Updated Jan 27, 2026
Python

RuolinHe / NRPS-motif-Finder

NRPS motif Finder

motif secondary-metabolites nrps

Updated Aug 3, 2025
MATLAB

chiasinL / pseudomonas-project-mgen

Analysis code accompanying manuscript published in Microbial Genomics. Please refer to README for more information.

comparative-genomics secondary-metabolites genome-mining antimicrobial-gene-clusters burkholderia-glumae-control pseudomonas-protegens-pbl3

Updated Sep 8, 2026
Python

kblin / fungal-ui

A web UI for the fungal version of antiSMASH.

gff3 genbank microbial-genomics microbiology fungi embl antismash secondary-metabolites genome-mining

Updated Apr 9, 2019
JavaScript

Qasim-Hussain-Code / pan_biosynthetic_gene_cluster_atlas

The Pan-BGC Atlas is a high-throughput computational pipeline dedicated to the discovery, annotation, and structural characterization of Biosynthetic Gene Clusters (BGCs) across diverse microbial pangenomes.

computational-biology bioinformatics-pipeline microbial-genomics comparative-genomics gecco secondary-metabolites pangenomics system-biology biosynthetic-gene-clusters streptococcus-pneumoniae pathogen-evolution

Updated Aug 4, 2026
Python

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