DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Data intensive science for everyone.

A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom actions.

Structural variant toolkit for VCFs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

A tool to circularize genome assemblies

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

🚀 A sequencing simulator

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

CLI tool for flexible and fast adaptive sampling on ONT sequencers

Antimicrobial Resistance Identification By Assembly

Accurate and flexible loops calling tool for 3D genomic data.

WisecondorX — An evolved WISECONDOR

Protein Identification with Deep Learning

A package for designing compact and comprehensive capture probe sets.

Graph-based assembly phasing

Python3 scripts to manipulate FASTA and FASTQ files

de novo virus assembler of Illumina paired reads

non-redundant, compressed, journalled, file-based storage for biological sequences

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.