missuse / ragp Star 6 Code Issues Pull requests Filter plant hydroxyproline rich glycoproteins hmmscan hydroxyproline-rich-glycoproteins arabinogalactan-protein-sequences hydroxyproline-prediction signalp targetp phobius Updated Dec 28, 2021 R
michalbukowski / pfam-genomes Star 0 Code Issues Pull requests Snakemake pipeline for searching genomic sequences for those encoding proteins containing a given domain architecture snakemake proteins hmmer protein-sequence protein-domains pfam signalp Updated Jun 6, 2026 Python
Teaholicus / fungal-multidomain-cazyme-mining Star 0 Code Issues Pull requests Pipeline for discovering secreted multidomain fungal CAZymes using SignalP 6, DeepTMHMM, dbCAN, CD-HIT and homology-based candidate prioritization. python bioinformatics jupyter-notebook bioinformatics-pipeline comparative-genomics fungi secretome bioinformatics-analysis hmmer genome-mining cd-hit signalp dbcan cazyme cazymes enzyme-discovery deeptmhmm Updated Jun 25, 2026 Roff