Skip to content
#

subsampling

Star

Here is 1 public repository matching this topic...

Language: C
Filter by language
All 29 Python 13 Jupyter Notebook 4 Kotlin 3 R 3 Rust 2 C 1 C++ 1 CMake 1 HTML 1

stevenweaver / kmer-diversity-sieve

Star 0

Alignment-free k-mer diversity sieve for archive-scale FASTA: a streaming C filter (Count-Min-sketch admission + MinHash/LSH novelty) that reduces tens of millions of sequences to a QC'd, diversity-preserving subset in one pass. Three backends from one source — serial (no deps), pthreads, MPI. Code only.

c bioinformatics genomics mpi minhash pthreads locality-sensitive-hashing count-min-sketch fasta subsampling
  • Updated Sep 23, 2026
  • C

Add this topic to your repo

To associate your repository with the subsampling topic, visit your repo's landing page and select "manage topics."

Learn more