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1. prokka prokka Public

   ⚡ ♒ Rapid prokaryotic genome annotation

   Perl 994 236

2. snippy snippy Public

   ✂️ ⚡ Rapid haploid variant calling and core genome alignment

   Perl 594 123

3. shovill shovill Public

   ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

   Perl 268 49

4. abricate abricate Public

   🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

   Perl 514 104

5. mlst mlst Public

   🆔 Scan contig files against PubMLST typing schemes

   Perl 304 60

6. barrnap barrnap Public

   🔬 ♌ Microbial RNA annotation

   Perl 315 47