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1. bhardwaj-lab/sincei bhardwaj-lab/sincei Public

   A command-line and python toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data

   Python 8

2. deeptools/deepTools deeptools/deepTools Public

   Tools to process and analyze deep sequencing data.

   Python 763 219

3. deeptools/HiCExplorer deeptools/HiCExplorer Public

   HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

   Python 276 75

4. maxplanck-ie/snakepipes maxplanck-ie/snakepipes Public

   Customizable workflows based on snakemake and python for the analysis of NGS data

   Python 407 91

5. deeptools/pyGenomeTracks deeptools/pyGenomeTracks Public

   python module to plot beautiful and highly customizable genome browser tracks

   Python 899 127

6. Subread_to_DEXSeq Subread_to_DEXSeq Public

   Scripts to import your FeatureCounts output into DEXSeq

   Python 35 20