Hi Jeremiah,
New versions of GCC choke on the current bwa/fermi-lite submodules, due to an issue fixed in the following commit: lh3/bwa@2a1ae7b (there is not a complementary commit in fermi-lite, so you have to add the extern keyword yourself in a forked repo).
As a result, SeqLib cannot build on GCC 10. Updating the bwa submodule to its latest version (and manually fixing the fermi-lite submodule) fixes this.
—Julian
Hi Jeremiah,
New versions of GCC choke on the current bwa/fermi-lite submodules, due to an issue fixed in the following commit: lh3/bwa@2a1ae7b (there is not a complementary commit in fermi-lite, so you have to add the
externkeyword yourself in a forked repo).As a result, SeqLib cannot build on GCC 10. Updating the bwa submodule to its latest version (and manually fixing the fermi-lite submodule) fixes this.
—Julian