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Shiny App to investigate the presence of species of interest in metabarcoding data

R 2 Updated May 18, 2026

Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

Python 392 45 Updated Oct 1, 2026
Jupyter Notebook 13 1 Updated Dec 22, 2025

Homo v2.1: A program for analysing compositional heterogeneity across aligned sequence data (controls the family-wise error rate and the false discovery rate)

C++ 1 Updated Apr 9, 2023

A robust and fast clustering method for amplicon-based studies

C++ 150 24 Updated Sep 19, 2026

R package for comparison of synteny conservation at the genome-wide scale.

R 17 Updated Jun 6, 2024

oxford dot plots

Python 175 13 Updated Sep 20, 2026

A genome visualization python package for comparative genomics

Python 424 26 Updated Jun 14, 2026

Gmove is a gene prediction tool

C++ 21 1 Updated Oct 9, 2024

ancestry

R 1 1 Updated May 7, 2022

Graphical user interface for exploring space, time, and taxa in the PBDB

JavaScript 45 15 Updated Sep 3, 2026

Shiny app that plots NCBI genomes size versus protein count

R 6 1 Updated Oct 15, 2018

Python library for the symbolic manipulation of phoneme representations

Python 3 Updated Feb 11, 2023

Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).

Python 14 2 Updated Mar 28, 2022

A complete pipeline for metagenomic analysis

Scilab 453 89 Updated Aug 28, 2026
R 268 32 Updated Jan 24, 2025

A parser for Google Scholar, written in Python

Python 2,175 769 Updated Jul 14, 2026

Transcript assembly and quantification for RNA-Seq

C++ 533 91 Updated Aug 9, 2026

GenomeTools genome analysis system.

C 344 65 Updated Nov 10, 2025

An analysis and visualization platform for 'omics data

Python 535 170 Updated Oct 1, 2026

COPSE reloaded public release

MATLAB 15 5 Updated Dec 4, 2017

Extensive de-novo TE Annotator

Perl 470 94 Updated Sep 10, 2026

Get, parse, and extract information from the SRA metadata files

Python 46 5 Updated Sep 20, 2022

Make Interactive Complex Heatmaps

R 143 26 Updated Jan 30, 2026

Check and score C/C++ software quality

Python 68 6 Updated May 27, 2023

A simple code complexity analyser without caring about the C/C++ header files or Java imports, supports most of the popular languages.

JavaScript 2,541 297 Updated Oct 2, 2026

An accurate GFF3/GTF lift over pipeline

Python 559 60 Updated Aug 1, 2023

A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.

Perl 97 11 Updated Nov 23, 2024

Python programs for processing GFF3 files

Python 105 27 Updated Jul 29, 2026

"Unravelling the Evolution of Animals" following a Bioinformatics pipeline

Perl 7 2 Updated Dec 12, 2018
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