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zhengxinchang/README.md

👉Hey there, wellcome to my GitHub!👈

🔥About Me🔥

struct ⭐Xinchang⭐ { 
    🍕name: String,
    👦gender: String,
    🍎keywords:Vec<String>,
    ⛺current_location: String,
    💼research: Vec<String>,
    🌴program_languages: Vec<String>,
    🎅hobbies: Vec<String>,
}

impl ⭐Xinchang⭐ {
    fn init() -> Self {
        ⭐Xinchang⭐ {
            🍕name: String::from("Xinchang Zheng"),
            👦sex: String::from("Male"),
            ⛺current_location: String::from("Houston, Texas"),
            🍎keywords: vec![
                String::from("Researcher"),
                String::from("Bioinformatician"),
                String::from("Full-stack web developer"),
                String::from("Video games fan"),
                String::from("INTJ")
            ],
            💼research: vec![
                String::from("Bioinformatics"),
                String::from("Cancer genomics"),
                String::from("Software engineering"),
                String::from("Biomedical database/webserver"),
                String::from("Data visualization"),
                String::from("Long read sequencing"),
            ],
            🌴program_languages: vec![
                String::from("Python"),
                String::from("Rlang"),
                String::from("JavaScript/HTML/CSS(Vue)"),
                String::from("Rust"),
                String::from("C/C++"),
                String::from("Linux/Shell(HPC)")
            ],
            🎅hobbies: vec![
                String::from("Vedio games(Nintendo Switch/Steam Fan)"),
                String::from("Pokemon!"),
                String::from("Digital Map Exploration Enthusiast"),
                String::from("Chromatic Harmonica (Very Amateur)")
            ],
        }
    }
    fn say_hi(🌕) -> String {
        "Hey there!".to_string()
    },
}

Databases/Webservers:

  1. MACdb "A curated knowledgebase for Metabolic Associations across human Cancers"
  2. CCLHunter "An efficient toolkit for cancer cell line authentication"
  3. CCAS "One-stop and comprehensive annotation system for individual cancer genome at multi-omics level"
  4. GenBase🍄 "A genetic sequence database that accepts user submissions and integrates data from INSDC"
  5. BIT🍄 "Bioinformatics tookit in National Genomics Data Center"
  6. Protdb🍄🌵 "A curated protein biomarker database for diseases"
  7. STIX webserver🍄 "Web Server for STIX"

Tools:

  1. ttable-rs "A standalone table formatter for viewing tabular data in the console"
  2. hapnet.js🌵 "A JavaScript library to draw haplotype network in a fast way" demo
  3. excord-lr🌵 "Extract structural variation signals from long-reads BAM files"
  4. STIX🍄 "Structural Variation serach engine for large datasets"
  5. swapfinder 🌵 "Sample swap identification"
  6. vcfgrpaf "Calculate allele frequency by groups in VCF file"
  7. popcorn🌵 "population scale SV genotyper at read level"
  8. isopedia🌵 "Analyze your transcripts in the context of thousands of long-read transcriptome"
  9. isomatch🌵 "Sequence-aware, long-read RNAseq native merge and classify transcripts at population-scale"

🍄: collaborated project, 🌵: on-going

My home page can be found at here

Pinned Loading

  1. isopedia isopedia Public

    Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing

    Rust 44 5

  2. isomatch isomatch Public

    End-to-end provenance tracking throughout transcript merging and interpretation

    Rust 15

  3. stix stix Public

    Forked from ryanlayer/stix

    Structural Variant Index

    C 1

  4. swapfinder swapfinder Public

    Fast and accurate sample swap identification

    Rust 1

  5. hapnet.js hapnet.js Public

    Javascript library for haplotype network

    JavaScript

  6. excord-lr excord-lr Public

    Extract Structural Variation signals in Long Reads BAM.

    Rust 1