Let $\mathcal C$ be a small category, and consider the topos $Psh(\mathcal C)$ of $Set$-valued presheaves on $\mathcal C$. For simplicity, assume that there exists a proper class of inaccessible cardinals. If $\kappa$ is an inaccessible exceeding the size of $\mathcal C$, a universe of size $\kappa$ in $Psh(\mathcal C)$ is supposed to roughly be an object $U_\kappa \in Psh(\mathcal C)$ such that morphisms $X \to U_\kappa$ correspond to maps $Y \to X$ with $\kappa$-small fibers.
There is some subtlety here having to do with ensuring that the the universe is a (strict!) functor $\mathcal C^{op} \to Set$. But Hofmann and Streicher observed (in an unpublished note (that's a direct link to a 4-page pdf)) that there is a very natural way to construct such a universe. Namely, let $U_\kappa(I) = Psh_\kappa(\mathcal C/I)$, where $Psh_\kappa = Fun( (-)^{op}, Set_\kappa)$ is the category of presheaves with values in $V_\kappa$, and $\mathcal C/I$ is the slice category.
But for some reason, even after Hofmann and Streicher's note, some authors have continued to use universe constructions which are more elaborate and less canonical. See, for example Kapulkin and Lumsdaine, or Cisinski, involving well-orderings, or choices of actions of simplicial operators. My question is: why?
Question 1: Is there any reason to prefer more elaborate universe constructions to Hofmann-Streicher universes?
Question 2: If I'm reading something like Cisinski's book above, is it safe for me to replace all occurrences of his more elaborate universes with Hofmann-Streicher universes?
To be clear -- after constructing a Hofmann-Streicher universe, you generally want to cut down to some subuniverse to study things like left/right or co/cartesian fibrations, so this is not the end of the story. That's part of why I ask -- it's conceivable that one of these later steps will depend in an essential way on the initial choice of generic universes.