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Mapping aging in killifish

  • Gabriele Morabito
  • Handan Melike Dönertas
  • Dario Riccardo Valenzano
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  • The dynamics of breast tissue aging are characterized by imaging mass cytometry of over 500 reduction mammoplasties, revealing nonlinear loss of cellularity and a compositional shift favoring inflammation.

    • Pulkit Gupta
    • Eric Lee
    • H. Raza Ali
    ResourceOpen Access
  • To dissect lncRNA functions in aging, here the authors perform a CRISPRi-based single-nucleus multiomics screen systematically perturbing 32 aging- and senescence-associated lncRNAs and measuring matched changes in gene expression and chromatin accessibility. They pinpoint a role for HOTAIRM1 linked to DNA repair-related gene control and show that replenishing HOTAIRM1 in mouse lungs reduces fibrosis.

    • Shouxuan Zhu
    • Sunyang Ying
    • Jing-Dong J. Han
    Article
  • Epigenetic clocks are promising biomarkers of biological aging but require longitudinal evaluation. In this longitudinal study, the authors evaluated whether temporal acceleration of multiple epigenetic clocks was associated with mortality, and report that faster increases in several clocks were linked to higher risk of death, independent of baseline epigenetic age and other confounders.

    • Pei-Lun Kuo
    • Ann Zenobia Moore
    • Luigi Ferrucci
    LetterOpen Access
    • Microglial morphology can indicate functional states in aging and age-related diseases, yet subcellular transcriptional organization remains poorly understood. Combining multiplexed error-robust fluorescence in situ hybridization (MERFISH) with fluorescent immunohistochemistry, Henze et al. demonstrate that subcellular localization patterns of transcripts in microglia uncover age-associated morphological alterations, which emphasizes the intricate cellular remodeling that underlies brain aging processes and functional diversity.

      • Philipp Schaible
      • Daniel Erny
      News & Views
    • In this study, imaging mass cytometry was used to chart the multicellular dynamics of breast tissue with age. The spatial distribution of 40 proteins in normal tissues from 527 women shows that the density of cells and their proliferation diminish as the breast ages, and that the proportion of inflammatory immune cells increases.

      Research Briefing
    • Multiple epigenetic clocks have been developed to quantify biological aging. However, whether longitudinal changes in epigenetic clocks carry independent information on health and survival has remained uncertain. Here, we show that longitudinal changes in several epigenetic clocks are independently associated with long-term mortality in a cohort that was followed for up to 24 years.

      Research Briefing
    • A new study conducted by Song and colleagues reveals that phosphoenolpyruvate (PEP), a metabolite in glycolysis, acts as an innate immune checkpoint by directly inhibiting cyclic GMP–AMP synthase (cGAS). The biphasic fluctuation of PEP levels during aging — and its eventual collapse — offers a metabolic explanation for the onset of inflammaging and neurodegeneration.

      • Erlin Wang
      • Jianxiong Zeng
      News & Views
    • The growing aging population is increasing the burden of neurodegenerative diseases, which highlights the need to understand disease heterogeneity for better management. Using a transformer-based analysis of electronic health records, Lian et al. identified five distinct Alzheimer’s disease and Parkinson’s disease subtypes with unique clinical trajectories, comorbidities and genetic profiles, which enhances understanding of neurodegenerative disease heterogeneity.

      • Thomas Nedelec
      • Jean-Christophe Corvol
      News & Views
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