Human figure enveloped by DNA strand in front of globe surrounded by microorganisms

Microbial ecology and evolution in the genomics era

Genomic approaches have transformed how we study microorganisms. This Focus issue explores the insights gained from the application of microbial genomics within ecological and evolutionary contexts.

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    Share your Tools of the Trade

    Are you an early-career researcher who helped develop a cool tool or method? Would you like others to learn about it? Let us know! Our Tools of the Trade articles showcase new computational or technological advancements in genetics and genomics. Email nrg@nature.com with a link to the paper on your method/tool and a few words on the gap that it fills.

  • Coloured single cells in shapes of fireworks on black background

    This Nature Reviews Genetics collection brings together Reviews written by key opinion leaders on single-cell omics methods and applications.

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    This online collection on RNA splicing by Nature Reviews Genetics and Nature Reviews Molecular Cell Biology showcases novel biological insights facilitated by recent technological and computational advances.

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  • China’s large, multi-generational pedigrees provide a distinctive genomic resource for precision medicine but present a governance challenge. We propose a new framework that addresses the core contradiction between individual-centric governance and the collective nature of these genomic datasets.

    • Huiqi Lin
    • Lulu Ding
    • Yaojin Peng
    Comment
  • In this Journal Club, Emilie Brasset highlights a 1995 publication by Prud’homme et al., who designed a clever genetic assay to identify a gene important for TE silencing, which provided a crucial foundation for later studies to unravel the underlying mechanisms.

    • Emilie Brasset
    Journal Club
  • In this Journal Club, Yousuf A. Khan recounts a landmark study published in 1985 by Jacks and Varmus that documented programmed ribosomal frameshifting in retroviruses, which later inspired Yousuf to search for this phenomenon in vertebrates.

    • Yousuf A. Khan
    Journal Club
  • Chikashi Terao recalls a paper by Loh et al., which introduced a highly sensitive algorithm to detect low-fraction chromosomal mosaicism from SNP array data, enabling large-scale mapping of clonal haematopoiesis.

    • Chikashi Terao
    Journal Club
  • In this Tools of the Trade article, Jingchuan Luo discusses LOCL-TL (LOV domain-controlled ligase for translation localization), a method they helped develop to enable the study of subcellular translation at codon-level resolution.

    • Jingchuan Luo
    Tools of the Trade
  • In this Journal Club, Fumitaka Inoue discusses a 2009 paper by Patwardhan et al. that introduced a massively parallel saturation-mutagenesis assay that leverages high-throughput DNA synthesis and sequencing to quantify the effects of single-nucleotide changes on regulatory element activity.

    • Fumitaka Inoue
    Journal Club
Globe surrounded by multi-coloured DNA helices

Machine learning in genomics

Machine learning has revolutionized the way researchers analyse and interpret the vast amounts of genomic data that are increasingly available.
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