Issues

• How to stop error correction

  question
  BirolLab/RNA-Bloom#98 · Filter by author sanyalab opened on Aug 25, 2026
  1

  

• Warnings appearing related to sun.misc.Unsafe

  question
  BirolLab/RNA-Bloom#97 · Filter by author sanyalab opened on May 6, 2026
  1

  

• Question on parameters

  question
  BirolLab/RNA-Bloom#95 · Filter by author sophiachen1 opened on Apr 3, 2026
  4

  

• Detecting fusion transcripts in long read or paired-end short read

  question
  BirolLab/RNA-Bloom#93 · Filter by author cprovido opened on Dec 2, 2025
  1

  

• Support lower-case read sequences

  enhancement
  BirolLab/RNA-Bloom#91 · Filter by author kmnip opened on Apr 6, 2025

• Matching read IDs for each transcript

  question
  BirolLab/RNA-Bloom#86 · Filter by author andyjslee opened on Mar 12, 2025
  1

  

• ERROR: Index 1 out of bounds for length 1

  question
  BirolLab/RNA-Bloom#85 · Filter by author berath opened on Mar 8, 2025
  1

  

• Issue with "-mergepool" option

  question
  BirolLab/RNA-Bloom#83 · Filter by author mgabriel01 opened on Jan 20, 2025
  4

  

• Improve hairpin/palindrome removal in long-read assembly

  enhancement
  BirolLab/RNA-Bloom#55 · Filter by author kmnip opened on Aug 15, 2023
  

• Output error message for pooled assembly of single-end reads

  bug
  BirolLab/RNA-Bloom#54 · Filter by author kmnip opened on Aug 9, 2023
  

• questions about how to get genes from the output

  enhancementquestion
  BirolLab/RNA-Bloom#53 · Filter by author alexyfyf opened on Aug 2, 2023
  4

  

• Feature request: long-read reference-guided assembly

  enhancement
  BirolLab/RNA-Bloom#51 · Filter by author oneillkza opened on Nov 3, 2022