bioinformatics-tool

Scissor package

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

Protein structure alignment and search algorithm

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

Linear-time de novo Long Read Assembler

a guideRNA database generation tool

KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.

StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.

fast and comprehensive k-mer counting package

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!

gapped-kmer based whole genome alignment software

SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.

A tool for mass spectrometry data analysis.

The repo was not under active development. Check out angsd toolkit for low depth data analyses.

Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data

STX operon typing

BLAST without Sys.Call()