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multiple-sequence-alignment

Here are 5 public repositories matching this topic...

loukesio / blastar

Retrieve NCBI sequences, run pairwise and multiple alignments, and build phylogenetic trees in R. Needleman-Wunsch, Smith-Waterman and Neighbor-Joining.

bioinformatics r phylogenetics rstats blast ncbi sequence-alignment multiple-sequence-alignment

Updated Jul 5, 2026
R

kullrich / MSA2dist

MSA2dist calculates pairwise distances for DNAStringSet/AAStringSet using custom scoring, conducts codon analyses (including dNdS), and estimates Dxy/FST

bioinformatics r dnds-estimation score-matrix dnds multiple-sequence-alignment bioconductor-package iupac msa2dist kaks

Updated Jun 26, 2026
R

MountainMan12 / GISAID_phylo

COVID-19 mortality risk assessment among various age groups using phylogenomic analysis

python3 phylogenetic-trees odds-ratio r-programming multiple-sequence-alignment covid-19 sars-cov-2

Updated Sep 2, 2020
R

jimmyliu1326 / msa-vis

Publication-grade visualizations for multiple sequence alignments

visualization bioinformatics multiple-sequence-alignment

Updated Mar 3, 2023
R

cankocagil / BioStatistics

Differential Gene Expression, Phylogenetic tree, Sequence Alignments, Biostatistics, Bioinformatic

machine-learning bioinformatics statistical-learning data-visualization biostatistics dimensionality-reduction phylogenomics r-programming sequence-alignment differential-gene-expression biotechnology multiple-sequence-alignment biostatistical-computing

Updated Jun 23, 2021
R

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