functional-enrichment-analysis

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Explore the cancer relevance of your gene list

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

Uncovering Amiloride's Mechanisms of Action in Multiple Myeloma: A Bioinformatics Approach

Gene Set Clustering based on Functional annotation

SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.

Functional Enrichment Analysis and Network Construction

FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID

Repository for all R scripts and results associated with my research dissertation for the MSc Bioinformatics and Computational Biology degree in University College Cork, 2022.

The MeRIP-seq data analysis tutorial is structured into four submodules, designed to comprehensively guide users through the complete workflow for RNA methylation analysis

Workflow to reduce GO bias (Gene propagation)

Enrichment Methods Matter

Project for the course of Network Based Data Analysis 💻

Collection of code that maps IDs and does enrichment.

RNA-seq analysis of tumour-associated CD8+ T cells in Mus musculus using DESeq2 and GSEA.

Transcriptomic differential expression and functional enrichment analyses of labial glands, fat body and gut tissues in Achroia grisella and Galleria mellonella

Differential Gene Expression Analysis: Normal vs UUO Mouse Models

List to pathway, or l2p, is an R package for gene set enrichment analysis that is optimized for speed.

This repository contains an end-to-end RNA-Seq DGE Analysis pipeline built in RStudio to analyze host transcriptional responses to SARS-CoV-2 across multiple cell lines. Using raw read counts from the GSE147507 benchmark study, this pipeline handles complex multi-condition experimental matrices and implements rigorous quality-control protocols.

Investigating the transcriptomic architecture and functional landscape of NAA15-associated Neurodevelopmental Disorders (NDD) through comparative gene expression profiling.