Calculation of interatomic interactions in molecular structures
A Nextflow pipeline for end-to-end long-read proteogenomics analysis
A Python package that aims to characterise the dynamics of local chemical environments from Molecular Dynamics trajectories of proteins and other biomolecules. Public mirror of https://gitlab.jsc.fz-juelich.de/slbio/speadi.
Topological data analytic approach for discovering biophysical signatures in protein dynamics
protclust is a Python library for protein sequence analysis that integrates MMseqs2 for fast clustering and provides tools for creating robust machine learning datasets. It offers cluster-aware data splitting to prevent sequence similarity bias in model evaluation, along with comprehensive protein embedding capabilities for feature generation.
Superposition-based Protein Embedded CA SC score
Reproducible comparative genomics study investigating human TP53 cancer mutation hotspots across elephant TP53-related sequences, integrating sequence conservation, phylogenetic analysis, computational prioritization, and research software to explore evolutionary conservation of cancer-associated residues.
Faster, Friendlier Protein Analysis in ChimeraX for everyone
Stand Alone version of ConSurf with better amino acid analysis - (installation + database + usage + analysis) - Fork of leezx/ConSurf-StandAlone
Bioinformatics analysis of adenovirus E1A proteins using Python, Biopython, LocalCIDER and AIUPred.
PRO-LIFE is a research-oriented platform for protein structure and sequence analysis. It ingests 3D protein coordinates and PDB data, computes geometry metrics with a high-performance C++ engine, visualizes structures in the browser, and provides a baseline machine-learning workflow for ranking candidate protein sequences.
🧬 AI-powered protein structure-function analysis tool with 8-state secondary structure prediction, functional region identification, and interactive visualization. Built for researchers, educators, and students to understand how protein structure drives biological function.
Per-taxonomy BLASTP search tool for balanced sequence retrieval from NCBI
Research-oriented bioinformatics toolkit for protein sequence analysis using Python.
RATISS - Professional Medical Analysis & Validation Portfolio (p53 Protein)
Python tool for analyzing protein point mutations. Calculates changes in molecular weight, charge, and hydrophobicity. Classifies mutations by severity and generates visualizations and HTML reports.
ParylationPredictor — predict PARylation sites and detect PAR-binding domains in proteins. Publication-quality 8-panel figures, Excel, HTML report, JSON/TSV exports.
A Bioinformatics Web Application for Protein Sequence Analysis built with Python, Biopython and Streamlit.
🧬Protein Functions Prediction through Amino Acids Sequences🧬
Interactive bioinformatics web application for DNA and protein sequence analysis built using Python, Streamlit and Biopython.
To associate your repository with the protein-analysis topic, visit your repo's landing page and select "manage topics."