📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data.
🍃 SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.
RUPEE: A fast and accurate purely geometric protein structure search
⚒️ Macromolecular Miner - A framework for template-free detection of substructure conservation in biological structure data.
Search protein structural motifs in the PDB.
Topology of Oriented Protein Structures
Software for visualizing and exporting proteins as a graph model in various formats. There are additional features for graph-based homology modelling
Java command line tool for fetching, parsing and displaying in a Jmol window all interactions zones between proteins or molecular complexes
A Java program that checks RNA similarity between strings.
CrossLinX is the acronym of protein CrossLINks eXplorer.
An interactive and educational tool designed to help middle school students understand the basics of protein folding, mutations, refolding, and denaturation. This fun, visual application uses Java and Swing to simulate the complex process of protein structure formation and changes.
Turn any Android screen into a motion-driven 3D folding illusion with perspective, tilt, and blur—no foldable hardware or root needed.
An implementation of the GOR method, an information theory-based method for the prediction of secondary structures in proteins.
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