🧬 An R package for visualizing molecular data in 3D
MOLeculAR structure annoTator
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.
Metal and Water prediction
Web application for protein-ligand binding sites analysis and visualization
rvDNA — AI-native genomic analysis in pure Rust + WASM: biomarker risk scoring, 23andMe genotyping, CYP2D6/CYP2C19 pharmacogenomics, variant calling, protein prediction, epigenomics, and HNSW vector search.
MSEABOARD: A web-based dashboard for interactive visualization and analysis of multiple sequence alignments, phylogenetic trees, protein structures, distance matrices and associated data.
A 3D viewer and analysis workbench for protein and nucleic-acid structures, predicted complexes, density maps and structural proteomics data. One self-contained program for your own computer, installed with one command; your files stay on your machine.
a 3D/XR view on the RYR1 protein using three.js PDB Loader, downsampling, and instanced materials
The Visualization of Protein-Ligand Graphs software that powers the PTGL webserver at http://ptgl.uni-frankfurt.de/. One of my PhD projects.
Lightweight Mol* 3D molecular viewer for VS Code — thumbnail grid browser + syntax highlighting for 15+ formats
Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.
3D Protein Visualizer BlueGenes compatible tool
Tracking publications on AlphaFold 2 and its applications.
Learn how AlphaFold2 works by seeing it and by running real LocalColabFold inference on your own GPU. Interactive, visual companion to the AlphaFold2 paper.
Structural Bioinformatics Course @UAM
Genomics To Proteins - Bio Integration Suite
Browser toolkit for DNA, RNA, protein, table, plot, and workflow analysis
A tool to visualize 1-D versus 3-D pair-wise residue distances of a protein structure.
Interactive viewer for protein structure and clade-specific changes
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