You're assuming that the condition of the universe would have any affect on her space ship ... it wouldn't
The heat death of the universe is not an area-of-effect event. It isn't defined by some artifact that causes everything to (simplifying!) stop vibrating. It's defined as the moment when the atomic structure of everything that naturally exists stops vibrating/moving/etc.1
Bing! Your astronaut's space ship suddenly appears in the universe. It's entirely and completely unaffected by the condition of the universe just as the universe is entirely and completely unaffected by the presence of the ship. Just because the ship's lights come on doesn't mean the universe hasn't experienced heat death and vice-versa.2
Said in a much simpler way: you're imposing a problem where no problem exists.
The ship's centrifugal gravity works just fine. It's measured just fine. The gravimeter used to measure it works just fine. If you want to know the rate of spin, spray paint a line across the proverbial spindle and bearings of the spinning section and use a stop watch to determine how long it takes for the outside to rotate around to the line on the inside once.
In like manner, your ship can accelerate just fine and that can be measured with an accelerometer (a specialized form of gravimeter) just fine.
As you've asked about in at least one previous question, the problem is navigation. That's when your astronaut must actually care about things outside the ship.
NOTE: It's really important to understand that the universe won't be trying to force something onto the ship... kinda. That well-balanced end-of-life condition would want the ship to be part of the well-balanced system. But it's not an overwhelming force. How far away is your ship from a big, lifeless, unmoving, cold rock in space? Does it matter? Does your ship have a Quetta-ton nuclear bomb? Would detonating it re-ignite a star? So what? Your ship can move around just fine and anything it can do to the universe compared to the universe itself would be so factually small and short-lived that it would be irrelevant. In the end, unless you bring some Clarkean Magic to bear, your astronaut will go stark raving mad from boredom — not because there's nothing to do (like ship maintenance), but because there's no reason to do it (nowhere to go and nothing to do when you get there).
1 This is a huge over-simplification of what scientists hypothesize is the ultimate fate of the universe. Maximum entropy. No heat, no motion, no nuthin'. I wouldn't lose too much sleep over it, though.
2 An argument could be made that the sudden presence of the ship would destabilize the balance of gravity, causing things to move ever so slightly and, thereby, back the universe away from it's heat death (etc.). Giving it a last breath of life, so to speak. Yup! Irrelevant. The piddly amount of injected energy due to the mass of the ship, it's waste byproducts, light streaming from its view ports, etc. is so infuriatingly small compared to the well-balanced nothing that exists at the HDOtU that everything will re-balance almost instantly (on an astronomical time scale...) as if the ship had never existed. So say we all.