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LSD Modulates Proteins Involved in Cell Proteostasis, Energy Metabolism and Neuroplasticity in Human Brain Organoids

View ORCID ProfileMarcelo N. Costa, Livia Goto-Silva, View ORCID ProfileJuliana M. Nascimento, Ivan Domith, View ORCID ProfileKarina Karmirian, Amanda Feilding, View ORCID ProfilePablo Trindade, Daniel Martins-de-Souza, View ORCID ProfileStevens K. Rehen
doi: https://doi.org/10.1101/2024.01.30.577659
Marcelo N. Costa
1D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Brazil
2Department of Genetics, Institute of Biology, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
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Livia Goto-Silva
1D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Brazil
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Juliana M. Nascimento
1D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Brazil
3Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil
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Ivan Domith
1D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Brazil
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Karina Karmirian
1D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Brazil
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Amanda Feilding
4The Beckley Foundation, Oxford, UK
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Pablo Trindade
5College of Pharmacy, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
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Daniel Martins-de-Souza
1D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Brazil
6Laboratory of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, Brazil
7Experimental Medicine Research Cluster (EMRC)
8University of Campinas, Campinas, SP 13083-862, Brazil
9Instituto Nacional de Biomarcadores em Neuropsiquiatria (INBION), Conselho Nacional de Desenvolvimento Científico e Tecnológico, São Paulo, Brazil
10INCT in Modelling Human Complex Diseases with 3D Platforms (Model3D), São Paulo, Brazil
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Stevens K. Rehen
1D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Brazil
2Department of Genetics, Institute of Biology, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
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  • For correspondence: stevens.rehen{at}idor.org
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ABSTRACT

The effects of psychedelics encompass modulation of subjective experience, neuronal plasticity, brain activity and connectivity, constituting a complex phenomenon. Underlying these effects, molecular changes at the protein level are expected. Proteomic analysis of human brain cells can elicit a comprehensive view of proteins and biological processes regulated within the central nervous system. To explore the molecular pathways influenced by lysergic acid diethylamide (LSD), we utilized mass spectrometry-based proteomics on human brain organoids. This approach allowed for an in-depth analysis of the proteomic alterations induced by LSD, providing insights into its effects at the molecular level within a brain-like environment. Alterations in proteostasis and energy metabolism, which are required for neural plasticity, were observed. Alongside, we identified changes in protein synthesis, folding, autophagy, and proteasomal degradation, as well as in glycolysis, oxidative phosphorylation, cytoskeleton regulation, and neurotransmitter release, providing a comprehensive view of the regulation of cellular process by LSD exposure. Furthermore, the ability of LSD to induce plasticity in human brain cells was corroborated through complementary in vitro experiments focusing on neurite outgrowth. This study sheds light on the specific proteins that LSD influences, thereby enhancing neurite extension and plasticity.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Correction of the color pattern of the figures.

  • ABBREVIATIONS

    α-SNAP
    soluble NSF attachment protein α
    5-HT
    5-hydroxytryptamine
    ACTN
    actinin
    AP2
    adaptor protein 2 complex
    ATP
    adenosine triphosphate
    BDNF
    brain-derived neurotrophic factor
    BSA
    bicinchoninic acid
    BSA
    bovine serum albumin
    cDNA
    Complementary DNA
    CME
    clathrin-mediated endocytosis
    CNS
    central nervous system
    CPNE1
    copine-1
    DAP
    differentially abundant proteins
    DAPI
    4’ 6-Diamidino-2-Phenylindole
    DAVID
    Database for Annotation, Visualization, and Integrated Discovery
    DIA
    data-independent acquisition
    DMEM/F12
    Dulbecco’s Modified Eagle Medium/Nutrient Mixture F-12
    DNA
    deoxyribonucleic acid
    DTT
    dithiothreitol
    ERM
    ezrin, radixin or moesin
    F2
    coagulation factor II
    F2R
    coagulation factor II receptor
    FC
    fold change
    FDR
    false discovery rate
    fMRI
    functional magnetic resonance imaging
    FN1
    fibronectin 1
    Gα12,13
    G protein subunit alpha 12, 13
    GABA
    gamma- aminobutyric acid
    GF
    growth factor
    GPCR
    G protein-coupled receptor
    GTPase
    guanosine triphosphatases
    Glu-Fib
    [Glu1]-fibrinopeptide B human
    HDMSE
    high-definition data-independent mass spectrometry
    hESC
    human embryonic stem cell
    HGNC
    HUGO Gene Nomenclature Committee
    hiPSC
    human induced pluripotent stem cell
    HUGO
    Human Genome Organization
    ITG
    integrin
    KEGG
    Kyoto Encyclopedia of Genes and Genomes
    KSR
    KnockOut Serum Replacement
    LC-MS/MS
    liquid chromatography tandem mass spectrometry
    LSD
    lysergic acid diethylamide
    M-MLV
    moloney murine leukemia virus
    MAP2
    microtubule-associated protein 2
    MCODE
    Molecular Complex Detection
    MEM-NEAA
    minimum essential media-nonessential amino acids
    MLC
    myosin light chain
    mRNA
    messenger ribonucleic acid
    mTOR
    mammalian target of rapamycin
    mTeSR1
    modified TeSR1 medium
    NADH
    nicotinamide adenine dinucleotide
    NSF
    N-ethylmaleimide-sensitive fusion protein
    NSC
    neural stem cell
    NT
    neurotransmitter
    OGA
    O-GlcNAcase
    PBS
    phosphate-buffered saline
    PCR
    polymerase chain reaction
    PFA
    paraformaldehyde
    Pen-Strep
    Penicillin-Streptomycin
    PPI
    protein-protein interaction
    Rho
    Rat sarcoma virus homolog
    ROCK
    Rho kinase
    ROCKi
    Rho- associated protein kinase inhibitor
    RIM
    Rab-interacting molecule
    RNA
    ribonucleic acid
    SNAP
    soluble NSF attachment proteins
    SNARE
    soluble NSF adaptor protein receptor
    RPM
    rotation per minute
    RTK
    Receptor Tyrosine Kinase
    STRING
    Search Tool for the Retrieval of Interacting Genes
    t-SNARE
    target SNARE
    TCA
    tricarboxylic acid
    Taq
    Thermus aquaticus
    TeSR1
    serum-free medium for human pluripotent stem cells
    TrkB
    tropomyosin receptor kinase B
    VAMP
    vesicle-associated membrane protein
    VGCC
    voltage-gated calcium channel
    V-ATPase
    vacuolar ATPase
    v-SNARE
    vesicle SNARE
  • Copyright 
    The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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    Posted February 09, 2024.
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    LSD Modulates Proteins Involved in Cell Proteostasis, Energy Metabolism and Neuroplasticity in Human Brain Organoids
    Marcelo N. Costa, Livia Goto-Silva, Juliana M. Nascimento, Ivan Domith, Karina Karmirian, Amanda Feilding, Pablo Trindade, Daniel Martins-de-Souza, Stevens K. Rehen
    bioRxiv 2024.01.30.577659; doi: https://doi.org/10.1101/2024.01.30.577659
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    LSD Modulates Proteins Involved in Cell Proteostasis, Energy Metabolism and Neuroplasticity in Human Brain Organoids
    Marcelo N. Costa, Livia Goto-Silva, Juliana M. Nascimento, Ivan Domith, Karina Karmirian, Amanda Feilding, Pablo Trindade, Daniel Martins-de-Souza, Stevens K. Rehen
    bioRxiv 2024.01.30.577659; doi: https://doi.org/10.1101/2024.01.30.577659

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