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Many organisms, such as diatoms and glass sponges, make use of silicon dioxide with various levels of hydration.

However, does any organism biosynthesize a chemical with carbon-silicon bonds?

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Despite silica being abundant in nature as the second most common element on earth, no substances of biological origin have been found that utilize silica in other forms than silica-oxygen compounds. This includes silicon-carbon bonds.

Why this did not happen is not fully clear, as it is possible to engineer enzymes, like reengineered cytochrome c heme proteins, to catalyze the formation of silicon - carbon bonds under biological conditions.

My guess is that is connected to the chemical properties of silicon:

  • Silicon tends to form strong bonds with oxygen instead of carbon, resulting in highly stable, insoluble silica-rich rocks rather than diverse, water-soluble molecules.

  • The Si–O bond is extremely stable and energetically costly to break, making it difficult for nature to produce Si–C compounds in water-rich, oxygen-rich environments like Earth's crust.

  • Silicon atoms are larger and have electrons in more distant shells than carbon, making Si–C bonds weaker and less stable than C–C bonds. ​​

References:

  1. Teaching nature the unnatural
  2. Directed evolution of cytochrome c for carbon–silicon bond formation: Bringing silicon to life
  3. Organosilicon Biotechnology
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  • $\begingroup$ "carbene insertion into silicon–hydrogen bonds" sounds like the starting materials are just as impossible biologically as the end result. So we have no example of enzymes, with or without directed evolution, making C-Si bonds from natural precursors not from exotic materials? $\endgroup$ Commented Nov 5 at 15:15
  • $\begingroup$ @KevinKostlan Have a look at the second reference (if you have problems accessing it, let me know) which did exactly this. So, it is possible but it doesn't seem to have evolved. Maybe for the reasons I mentioned above. Maybe for different, we don't seem to know. $\endgroup$ Commented Nov 5 at 19:52
  • $\begingroup$ The abstract seems to only mention Si-H bond precursors and the rest of the text is paywalled for me. $\endgroup$ Commented Nov 5 at 20:01
  • $\begingroup$ @KevinKostlan You can find the article here: e.pcloud.link/publink/… $\endgroup$ Commented Nov 6 at 12:39
  • $\begingroup$ Every single reaction they discussed that made Si-C bonds always had Si-H bonds in the starting reagents. Still a useful combination of human brute force (to make the Si-H bonds that are as far as we know impossible make biologically from from silica) and the finesse of biology to make more complex Si-C chemicals with steroselectivity when supplied with silanes. $\endgroup$ Commented Nov 9 at 21:26
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Silicon plays an important role for living entities at a lower stage of evolutionary development (silicate bacteria, simple algae, spore plants etc.) and also plants that are called "siliceous" by nature (due to their high silicon content). For higher animals and humans, silicon content is relatively small but plays a vital role. In the tissue of animals, silicon exist in three forms:

  1. Water soluble inorganic silicon capable of passing through cell walls and be eliminated from the body.
  2. Organosilicon compounds/complexes containing Si-O-C groups. These include ortho- and oligo- silicate ethers derived from cholesterols, proteins, carbohydrates etc. Compounds containing Si-C is not present in higher mammals but reported to be found in bacteria Proteus Mirabilis.
  3. Insoluble silico- polymers. These include amorphous silica, quartz. The surface of these polymers is covered by a chemisorbed layer of organic compound containing hydroxy- and amino- groups.

More details can be found in Ref. 1

References

  1. Biologically Active Compounds of Silicon by M.G.Voronkov and E.Lukevics, Russian Chemical Reviews, 38 (12), 1969
  2. Allison A. C., Silicon compounds in biological systems, Proc. R. Soc. Lond., 1968, B.17119–30, DOI: 10.1098/rspb.1968.0053
  3. Hrast, Martina & Obreza, A. (2010). The role of silicon compounds in living organisms. Farmacevtski Vestnik. 61. 37-41. (link)
  4. Petkowski JJ, Bains W, Seager S. On the Potential of Silicon as a Building Block for Life. Life (Basel). 2020 Jun 10;10(6):84. doi: 10.3390/life10060084.
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  • $\begingroup$ "Organosilicon compounds/complexes containing Si-O-C groups" which is interesting but not Si-C bonds. $\endgroup$ Commented Nov 9 at 21:13
  • $\begingroup$ living entities at a lower stage of evolutionary development is a misstatement. All organisms we see are equally evolved unless you are using an 1800's theological mindset where some organism is higher up the tree than others (but below "God") $\endgroup$ Commented Nov 28 at 0:45
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In order for C-Si bonds to not exist as part of an extended Silicon Carbide Ceramic structure, there are precious few options to terminate the Silicon into a molecular form. Hydrogen would be a reasonable starting consideration given abundance, but so would the halogen elements and various cyclic structures. However, even under assumption of their formation, water and oxygen (in molecular or other oxidizing speciation) would immediately hydrolyze such structures to silica. This is a well known reason why any such molecule presents handingling challenges in the laboratory. (See properties of methyltrichlorsilane) As another consideration, stump your friends with this question: " Where is silicon carbide mined"? Trick question. It is not. Silicon carbide is not known to exist as a mineral. This is because despite its thermal stability it is oxidized to silica itself on sub-ge9ligical timescale. Hence, virtually all Silicon on the planet is bonded to oxygen. The most abundant elements in earth's crust: 1) Oxygen 2) aluminum 3) Silicon. (See USGS) Silicon dioxide is common, but despite their nearly endless variety most rocks are a species of aluminosilicate.

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  • $\begingroup$ Your answer could be improved with additional supporting information. Please edit to add further details, such as citations or documentation, so that others can confirm that your answer is correct. You can find more information on how to write good answers in the help center. $\endgroup$ Commented Nov 27 at 13:45
  • $\begingroup$ Silicone oil has such Si-C bonds and it is air and water stable. I think this is because the silicon atoms still have two oxygen bonds? $\endgroup$ Commented yesterday

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